The FDR

False Discovery Rate is really important for most of us. This paper (lecture notes, actually) covers most of what you need to know. Gil Chu recently gave a talk on local FDR, so I am linking to that paper too. The first link's server seems to be down right now (hopefully temporarily). Anyone know what the difference between local FDR and PER is?

Multiple Hypothesis Correction
Review from Genome Res.
Local FDR